CORAA
Resources - NGO Internal Audit

NGO and charitable trust internal audit checklist.

NGO audit quality depends on proving that money received for a purpose was recorded, protected, spent for that purpose and reported with evidence. The file should tie donations, grants, FCRA, utilisation certificates, programme spends, beneficiary records, procurement, payroll, fund accounting and compliance into one RCM.

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RCM map

Nine areas to test areas

Donation receipts, donor records and 80G evidence

Risk: Donations are recorded without complete donor details, valid receipts, bank traceability, 80G reporting support or donor restriction tagging.

Controls
  • Receipt numbering control
  • Donor master validation
  • Bank reconciliation
  • 80G evidence review
Tests
  • Trace sampled receipts to bank credit and donor record
  • Review cancelled/duplicate receipts
  • Check PAN/address/80G certificate data for sampled donors
  • Test anonymous/cash donation flags
Evidence

Donation receipt, donor master, bank statement, payment reference, 80G certificate/reporting file and cancellation log.

Grants, restricted funds and utilisation certificates

Risk: Grant funds are used outside donor conditions, reported without evidence or carried forward without clear restricted-fund accounting.

Controls
  • Grant agreement review
  • Budget-to-actual tracking
  • Restricted fund ledger
  • Utilisation certificate review
Tests
  • Map grant agreement conditions to expense heads
  • Reconcile grant receipts, spends and closing restricted balance
  • Sample utilisation certificate evidence
  • Review overrun or unspent grant treatment
Evidence

Grant agreement, donor budget, restricted-fund ledger, expense vouchers, utilisation certificate, donor report and approval notes.

FCRA receipts, bank account and utilisation

Risk: Foreign contribution is received, transferred, invested or spent without FCRA registration/prior permission, designated account controls or proper utilisation evidence.

Controls
  • FCRA registration validity check
  • Designated bank account control
  • FC receipt and utilisation ledger
  • Annual return evidence review
Tests
  • Verify FCRA registration or prior permission status
  • Trace foreign receipts to the designated bank account and FC ledger
  • Sample utilisation against approved objects and programme evidence
  • Review annual-return support and old balances
Evidence

FCRA registration/prior permission, designated bank statement, FC receipt ledger, utilisation ledger, donor terms, vouchers and FCRA return support.

Programme expenses and beneficiary evidence

Risk: Programme expenditure is claimed without beneficiary evidence, field verification, budget linkage or proof that spend reached the intended activity.

Controls
  • Programme budget approval
  • Beneficiary register
  • Field verification
  • Expense-to-activity tagging
Tests
  • Sample programme expenses to beneficiary lists, attendance or delivery proof
  • Review duplicate beneficiaries and unusual reimbursements
  • Tie spends to programme budget and donor report
  • Check field-visit evidence
Evidence

Programme plan, budget, beneficiary list, attendance, distribution proof, field report, photos where appropriate and expense voucher.

Procurement, vendors and conflict checks

Risk: Goods or services are procured from related, conflicted, unapproved or split vendors without competitive evidence.

Controls
  • Vendor onboarding
  • Conflict declaration
  • Quotation/tender control
  • Purchase approval matrix
Tests
  • Review vendor onboarding and related-party declarations
  • Test split purchases below approval threshold
  • Match PO, GRN/service note, invoice and payment
  • Check tender/quotation evidence for sampled buys
Evidence

Vendor master, KYC, conflict declaration, quotation/tender file, PO, GRN/service confirmation, invoice and payment proof.

Payroll, consultants, volunteers and reimbursements

Risk: Payroll, consultant fees, honorarium, volunteer reimbursements or travel claims are unsupported, duplicate, excessive or not aligned with project budgets.

Controls
  • HR master control
  • Timesheet/activity approval
  • Consultant contract review
  • Reimbursement policy
Tests
  • Match payroll to HR master, attendance and bank payments
  • Review consultant deliverables and TDS where applicable
  • Sample travel and field reimbursements
  • Check allocation to restricted projects
Evidence

HR master, appointment/contract, attendance, timesheet, deliverable, claim form, approval, bank proof and project allocation.

Corpus, endowment, investments and fund accounting

Risk: Corpus, endowment or restricted funds are mixed with general funds, invested outside policy or used without donor/board approval.

Controls
  • Fund classification review
  • Board-approved investment policy
  • Investment register
  • Corpus utilisation approval
Tests
  • Reconcile corpus and restricted fund balances
  • Verify investment holdings and income allocation
  • Review donor restrictions and board approvals
  • Test fund transfers between project and general accounts
Evidence

Fund ledger, donor restriction note, board minutes, investment register, bank/FD statements and income allocation working.

Statutory registrations, returns and tax compliance

Risk: 12AB, 80G, FCRA, CSR-1, TDS, GST where applicable or statutory returns lapse without tracking, causing exemption, donor or grant risk.

Controls
  • Compliance calendar
  • Registration validity tracker
  • Return filing review
  • Exception escalation
Tests
  • Check validity of key registrations and renewal dates
  • Review income-tax, TDS, FCRA and CSR-1 evidence where applicable
  • Assess GST applicability for taxable activities
  • Age delayed filings and notices
Evidence

12AB/80G orders, FCRA certificate, CSR-1 acknowledgement, Darpan ID, return acknowledgements, challans, notices and compliance tracker.

Governance, related parties, MIS and safeguarding controls

Risk: Board oversight, related-party transactions, management information, whistleblowing, safeguarding or data controls are weak or undocumented.

Controls
  • Board meeting calendar
  • Related-party register
  • MIS review
  • Safeguarding and data-access policy
Tests
  • Review board minutes and approval trail
  • Test related-party transactions and conflict disclosures
  • Check programme/finance MIS quality
  • Review user access to donor, beneficiary and payroll data
Evidence

Board minutes, policy register, related-party register, MIS pack, access list, incident log and corrective-action tracker.

Continuous monitoring

NGO rules worth automating rules

RuleException logic
Missing receipt evidenceDonation or grant receipt is recorded without receipt number, donor record, bank trace or restriction tag.
Restricted fund mismatchProject spend exceeds donor budget, uses a restricted fund for another activity or leaves old unspent balances unexplained.
FCRA exceptionForeign contribution appears outside the designated account, lacks donor terms or is spent outside approved object/support.
Duplicate beneficiarySame beneficiary identifier, phone, bank account or address appears across incompatible programme claims.
Procurement splitMultiple same-vendor purchases fall just below approval or quotation thresholds within a short period.
Compliance delayRegistration renewal, FCRA return, income-tax return, TDS filing or statutory response is overdue or unsupported.
Export NGO workbookOpen monitoring repository
Downloads

Templates and linked tools workpapers

NGO Trust Audit Workbook

Generate an Excel/PDF workbook for donations, grants, FCRA, programme spends, procurement, payroll, fund accounting and compliance.

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Internal Audit RCM Builder

Convert NGO and trust risks into a working RCM with controls, tests, evidence and reviewer conclusion columns.

Open ->
Internal Audit Monitoring Rules

Use recurring exception logic for donation receipts, restricted funds, FCRA, procurement splits and compliance delays.

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P2P Internal Audit Checklist

Use for vendor onboarding, purchase approvals, three-way matching, reimbursements and payment controls.

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H2R Internal Audit Checklist

Use for employee, consultant, volunteer and reimbursement controls.

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Internal Audit Report Pack

Turn NGO audit exceptions into observations, root cause, management response and action-taken tracking.

Open ->
Authority

References to verify sources

Use this as an internal-audit workpaper starting point, not as FCRA, income-tax, CSR, GST or legal advice. Requirements vary by entity form, state law, donor conditions, FCRA status, foreign contribution facts, CSR funding, taxable activities and registration orders. Verify current law and entity-specific facts before finalising scope.

ICAI IASB - Technical Guide on Internal Audit of Not-for-Profit Organisations ->ICAI IASB - Compendium of Standards on Internal Audit ->MHA FCRA Online portal ->Income Tax Department - Trust guidance ->Income Tax Department - Section 80G ->NITI Aayog - Voluntary Action Cell and NGO Darpan ->National CSR eXchange - CSR-1 FAQ ->
FAQ

NGO internal audit FAQs questions

What should an NGO or charitable trust internal audit cover?

An NGO or charitable trust internal audit should cover donation receipts, donor records, 80G evidence, restricted grants, utilisation certificates, FCRA receipts and spending, programme expenses, beneficiary evidence, procurement, payroll, consultants, corpus, investments, statutory registrations, governance and related-party controls.

Which NGO audit checks are best for continuous monitoring?

High-value monitoring checks include donation receipts without bank trace, old unspent restricted grants, FCRA receipts outside designated controls, duplicate beneficiaries, procurement splitting, related vendors, unreconciled advances, delayed returns and registration renewal gaps.

Is this checklist a legal or FCRA compliance opinion?

No. This checklist is an internal-audit workpaper starter. FCRA, income-tax exemption, 80G, CSR-1, GST and state trust/society requirements must be verified against current law, registration orders, donor conditions and the entity facts before a compliance conclusion is made.

How is NGO internal audit different from company internal audit?

A company audit usually focuses on revenue, procurement, inventory, payroll and statutory compliance. NGO internal audit also tests donor restrictions, fund accounting, grant utilisation, beneficiary evidence, FCRA segregation, programme outcomes, governance and whether spending matches charitable objects.